代表性文章专著及专利
（完整清单见https://www.researchgate.net/profile/Lei-Cai-2/research）
[2025]
2. Phurbu D, Feng Z, Cai L, Liu F*. 2025. Rapid and sensitive diagnosis of plant quarantine fungi Alternaria triticina and Plenodomus libanotidis based on the RPA-CRISPR/Cas12a system. IMA Fungus 16: e153604. https://doi.org/10.3897/imafungus.16.153604
3. 梁俊敏#，王科#，杜卓，赵明君，蔡磊*，戴玉成*. 2025. 早期描述物种的模式标定及基因组解析—以中国第一个被描述的真菌新种五棱散尾鬼笔为例. 菌物学报. 44: 240296. https://doi.org/10.13346/j.mycosystema.240296
[2024]
1. Zhou X, Liu F, Wang CC, Zhang HL, Zhao P, Xie FH, Hu DM, Duan WJ*, Cai L*. 2024. Characterization of core microbiota of barley seeds from different continents for origin tracing and quarantine pathogen. Food Microbiology, 124: 104615. https://doi.org/10.1016/j.fm.2024.104615
2. Gao M, Xiong C, Tsui KMC, Cai L*. 2024. Pathogen invasion increases the abundance of predatory protists and their prey associations in the plant microbiome. Molecular Ecology, 33(3):e17228. https://doi.org/10.1111/mec.17228.
3. Razaghi P，Raza M, Han SL, Ma ZY, Cai L, Zhao P, Chen Q, Phurbu D*, Liu F*. 2024. Sporocadaceae revisited, Studies in Mycology, 109: 155–272. https://doi.org/10.3114/sim.2024.109.03
4. Wang MM, ... Li W, Cai L*. 2024. Microascaceae from the marine environment, with descriptions of six new species. Journal of Fungi, 10, 45. https://doi.org/10.3390/jof10010045
5. Zhao P, Feng ZP, Cai L, Phurbu D, Duang WJ, Xie FH, Li XL, Liu F*. 2024. Development of an RPA-CRISPR/Cas12a Assay for rapid and sensitive diagnosis of plant quarantine fungus Setophoma terrestris. Journal of Fungi. 10: 716.
6. Phurbu D, Huang JE, Song S, Ni Z, Zhou X, ..., Liu F*. 2024. Diversity of culturable fungi in six Tibetan Plateau lakes, with descriptions of eight new taxa. Mycology, 1–20.
7. 李辉，姜锋，杨春光，姜丽，赵鹏*，李鑫*. 2024. 微滴式数字PCR技术快速精准检测苹果牛眼果腐病菌Neofabraea perennans. 菌物学报. 43: 230126 https://doi.org/10.13346/j.mycosystema.230126.
8. 秦玉凡，赵鹏，韩士玲，刘芳，王科，段维军，巩文峰，王海香*，蔡磊*. 2024. 我国进境检疫性镰孢属物种的分类现状. 菌物学报. 43: 240024 https://doi.org/10.13346/j.mycosystema.240024
[2023]
2. Li M#, Raza M#, Song S, Hou LW, Zhang ZF, Gao M, Huang JE, Liu F*, Cai L*. 2023. Application of culturomics in fungal isolation from mangrove sediments. Microbiome, In press. https://doi.org/10.1186/s40168-023-01708-6
3. Hou LW, Giraldo A, Groenewald JZ, Rämä T, Summerbell RC, Huang GZ, Cai L*, Crous PW*. 2023. Redisposition of acremonium-like fungi in Hypocreales. Studies in Mycology, 105:23–203. https://doi.org/10.3114/sim.2023.105.02
4. Han SL, Wang MM, Ma ZY, Raza M, Zhao P, Liang JM, Gao M, Li YJ, Wang JW, Hu DM, Cai L*. 2023. Fusarium diversity associated with diseased cereals in China, with an updated phylogenomic assessment of the genus. Studies in Mycology. 104: 87–148. https://doi.org/10.3114/sim.2022.104.02
5. Liang JM. Li YJ, Dodds PN, Figueroa M, Sperschneider J, Han SL, Tsui CKM, Zhang KY, Li LF, Ma ZH, Cai L*. 2023. Haplotype-phased and chromosome-level assembly of Puccinia polysora, a giga-scale fungal pathogen causing southern corn rust. Molecular Ecology Resources, 23: 601–620. https://doi.org/10.1111/1755-0998.13739
6. Wang MM, Mara P, Burgaud G, Edgcomb V, Long X, Yang H, Cai L*, & Li W*. 2023. Metatranscriptomics and metabarcoding reveal spatiotemporal shifts in fungal communities and their activities in Chinese coastal waters. Molecular Ecology 32: 2750-2765. https://doi.org/10.1111/mec.16905
7. Zhao P, Li Y, Li YJ, Liu F, Liang JM, Zhou X, Cai L*. 2023. Applying early divergent characters in higher rank taxonomy of Melampsorineae (Basidiomycota, Pucciniales). Mycology, 14: 11–16. https://doi.org/10.1080/21501203.2022.2089262
8. Wang F, Wang K, Cai L, Zhao MJ, Kirk PM, Fan GM, Sun QL, Li B, Wang S, Yu ZF, Han D, Ma JC, Wu LH*, Yao YJ*. 2023. Fungal names: a comprehensive nomenclatural repository and knowledge base for fungal taxonomy. Nucleic Acids Research, 51: D708–D716. https://doi.org/10.1093/nar/gkac926
9. Liang JM, Huang JE, Wu LH, Cai L*. 2023. The Chinese Microbial Type-strain Genome Project. The Innovation Life, 1:100045. https://doi.org/10.59717/j.xinn-life.2023.100045
10. Li W*, Li Q, Pan ZH, Burgaud G, Ma HH, Zheng Y, Wang MM, Cai L*. 2023. Seasonal and Spatial Dynamics of Fungal Diversity and Communities in the Intertidal Zones of Qingdao, China. Journal of Fungi. 9: 1015. https://doi.org/10.3390/jof9101015
11. Zhang ZF, Mao J*, Cai L*. 2023. Dispersal limitation controlling the assembly of the fungal community in Karst Caves. Journal of Fungi. 9: 1013. https://doi.org/10.3390/jof9101013
12. 王科, 蔡磊*. 2023. 中国菌物分类学和多样性研究的历史与现状概况. 菌物学报, 2023, 42(1): 50–62.
https://manu40.magtech.com.cn/Jwxb/CN/10.13346/j.mycosystema.220497
[2022]
1. Zhou X, Wang J, Liu F, Liang JM, Zhao P, Clement KM Tsui, Cai L*. 2022. Cross-kingdom synthetic microbiota supports tomato suppression of Fusarium wilt disease. Nature Communications, 13, 7890. https://doi.org/10.1038/s41467-022-35452-6
2. Liu F#, Ma ZY#, Hou LW, Diao YZ, Wu WP, Damm U, Song S, Cai L*. 2022. Updating species diveristy of Colletotrichum, with a phylogenomic overview. Studies in Mycology, 101: 1–56. https://doi.org/10.3114/sim.2022.101.01
3. Chen Q, Bakhshi M, Balci Y, Broders KD, ... Cai L*, Crous PW*. 2022. Genera of phytopathogenic fungi: GOPHY 4. Studies in Mycology 101: 417–564. https://doi.org/10.3114/sim.2022.101.06
4. Zhou X, Zhang HL, Lu XW, Zhao P, Liu F, Qi ZH, Tang F, Duan WJ*, Cai L*. 2022. Applying meta-data of soybean grain in origin trace and quarantine inspection. Food Research International, 162: 111998. https://doi.org/10.1016/j.foodres.2022.111998
5. Lu JJ, Zhang XD, Zhang X., Wang LQ, Zhao RL, Liu XY, Liu XZ, Zhuang WY, Chen L*, Cai L*, Wang J*. 2022. Nanopora sequencing of full rRNA operon improves resolution in mycobiome analysis and reveals high diversity in both human gut and environments. Molecular Ecology,32: 6330-6344. https://doi.org/10.1111/mec.16534
6. Wang MM, Crous PW, Sandoval-Denis M, Han SL, Liu F, Liang JM, Duan WJ, Cai L*. Fusarium and allied genera from China: species diversity and distribution. Persoonia, 2022, 48: 1–53. https://doi.org/10.3767/persoonia.2022.48.01
7. Zhao P, Liu F, Huang JE, Zhou X, Qi XH, Duan WJ, Cai L*. 2022. Cronartium rust (Pucciniales, Cronartiaceae): species delineation, diversity and host alternation. Mycosphere, 13(1): 672–723. https://doi.org/10.5943/mycosphere/13/1/7
8. Qi ZH#, Zhou X#, Tian L, Zhang HY, Cai L*, Tang F*. 2022. Temporal and spatial variation of microbial communities in stored rice grains from two major depots in China, Food Research International, 152: 110876. https://doi.org/10.1016/j.foodres.2021.110876
9. Qi ZH#, Zhou X#, Tian L, Zhang HY, Cai L*. Tang F*. 2022. Distribution of mycotoxin-producing fungi across major rice production areas of China. Food Control, 134: 108572. https://doi.org/10.1016/j.foodcont.2021.108572
10. 王科，刘芳，蔡磊. 2022. 中国农业植物病原菌物常见种属名录. 菌物学报，41(3)：361–386. https://doi.org/10.13346/j.mycosystema.210483
[2021]
1.Gao M, Xiong C, Gao C, Clement K. M. Tsui, Wang MM, Zhou X, Zhang AM,Cai L*. 2021. Disease-induced changes in plant microbiome assembly and functional adaptation. Microbiome, 9, 187.https://doi.org/10.1186/s40168-021-01138-2
2. Zhao P, Zhang ZF, Hu DM. Tsui KMC, Qi XH, Phurbu D, Gafforov Y, Cai L*. 2021. Contribution to rust flora in China I, tremendous diversity from natural reserves and parks. Fungal Diversity, 110: 1–58. https://doi.org/10.1007/s13225-021-00482-w
3. Zhao P, Crous PW, Hou LW, Cai L, Liu F*. 2021. Fungi of quarantine concern for China I: Dothideomycetes. Persoonia, 47: 45–105. https://doi.org/10.3767/persoonia.2021.47.02
4. Liang JM, Li GS, Hou LW, Zhao MQ, Cai L*. 2021. Leptosphaerulina species isolated from golf turfgrass in China, with description of L. macrospora, sp. nov. Mycologia, 113: 956–967. https://doi.org/10.1080/00275514.2021.1923298
5. Zhou X, Wang JT, Wang WH, Tsui CKM, Cai L*. 2021. Changes in Bacterial and Fungal Microbiomes Associated with Tomatoes of Healthy and Infected by Fusarium oxysporum f. sp. lycopersici. Microbial Ecology, 81: 1004–1017. https://doi.org/10.1007/s00248-020-01535-4
6. 王科, 陈双林, 戴玉成, ..., 蔡磊*. 2021. 新世纪中国菌物新名称发表概况（2000–2020）. 菌物学报，40: 822–833. https://doi.org/10.13346/j.mycosystema.210064
7. 赵鹏，段维军，刘芳，周欣，范国梅，马紫英，蔡磊*. 2021. 我国植物检疫性菌物数据库平台的建设及应用, 微生物学报，61: 3806–3819. http://journals.im.ac.cn/html/actamicrocn/2021/12/20211206.htm
8. 贺鹏，陈军，孔宏智，蔡磊，乔格侠. 2021. 生物样本:生物多样性研究与保护的重要支撑. 中国科学院院刊，36: 425–435. http://old2022.bulletin.cas.cn/publish_article/2021/4/20210408.htm
[2020]
1. Hou LW, Groenewald JZ, Pfenning LH, Yarden O, Crous PW*, and Cai L*. 2020. The phoma-like dilemma. Studies in Mycology, 96: 309–396. https://doi.org/10.1016/j.simyco.2020.05.001
2.Zhang ZF, Zhou SY, Eruwilaichitr L, Lngsriswang S, Raza M, Chen Q, Zhao P, Liu F,Cai L*. 2020.Culturable mycobiota from Karst caves in China II, with descriptions of 33 new species.Fungal Diversity, 106: 29–136.https://doi.org/10.1007/s13225-020-00453-7
3. Zhao P, Qi XH, Crous PW, Duan WJ, Cai L*. 2020. Gymnosporangium species on Malus: species delineation, diversity and host alternation. Persoonia 45: 68–100. https://doi.org/10.3767/persoonia.2020.45.03
4. Hou LW, Hernández-Restrepo M, Groenewald JZ, Cai L*, Crous PW*. 2020. Citizen science project reveals high diversity in Didymellaceae. MycoKeys, 65: 49–99. https://doi.org/10.3897/mycokeys.65.47704
5. Zhou X, Wang JT, Zhang ZF, Li W, Chen W*, Cai L*. 2020. Microbiota in the rhizosphere and seed of rice from China, with reference to their transmission and biogeography. Frontiers in Microbiology, 11: 995. https://doi.org/10.3389/fmicb.2020.00995
6. Le EW, Ren JW, Chen Q, Zhang HX, Lin B, Zhang H, Zhang SM, Zhang XL, Cai L*, Liu XZ*. 2020. Uncovering the mysterious identity of Taisui—an old Chinese folk legend. Science China Life Sciences, 63: 1942–1945. https://doi.org/10.1007/s11427-019-1640-6
7. 周士越, 周欣, 张志锋, 梁俊敏, 蔡磊*. 2020. 未培养真菌分离培养方法初探. 菌物学报, 39: 766–776. https//doi.org/10.13346/j.mycosystema.190202
[2019]
1. Liu F, Bonthond G, Groenewald E, Cai L*, Crous PW*. 2019. Sporocadaceae, a family of coelomycetous fungi with appendage-bearing conidia. Studies in Mycology, 92: 287–415. https://doi.org/10.1016/j.simyco.2018.11.001
2. Raza M, Zhang ZF, Hyde KD, Diao YZ, Cai L*. 2019. Culturable Plant pathogenic fungi associated with sugarcane in southern China. Fungal Diversity, 99: 1–104. https://doi.org/10.1007/s13225-019-00434-5
3. Wang, MM, Chen Q, Diao YZ, Duan WJ, Cai L*. 2019. Fusarium incarnatum-equiseti complex from China. Persoonia, 43: 70–89. https://doi.org/10.3767/persoonia.2019.43.03
4. Li W*, Wang MM, Burgaud G, Yu HM, Cai L*. 2019. Fungal community composition and potential depth-related driving factors impacting distribution pattern and trophic modes from epi- to abyssopelagic zones of the Western Pacific Ocean. Microbial Ecology, 78: 820–831. https://doi.org/10.1007/s00248-019-01374-y
5. Liu F, Wang J, Li H, Wang W, Cai L*. 2019. Setophoma spp. on Camellia sinensis. Fungal Systematics and Evolution, 4: 43–57. https://doi.org/10.3114/fuse.2019.04.05
6. Zhang ZF, Cai L*. 2019. Substrate and spatial variables are major determinants of fungal community in karst caves in southwest China. Journal of Biogeography, 46: 1504–1518. https://doi.org/10.1111/jbi.13594
7. Liang JM, Li GS, Zhou SY, Zhao MQ, Cai L*. 2019. Myrothecium-like new species from trufgrasses and associated rhizosphere. MycoKeys, 51: 29–53. https://doi.org/10.1080/00275514.2019.1569417
8. Diao YZ, Chen Q, Jiang XZ*, Houbraken Jos, Cai L, Wu WP. 2019. Penicillium section Lanata-divaricata from acidic soil. Cladistics, 35: 514–549. https://doi.org/10.1111/cla.12365
[2018]
1. Li W*, Wang MM, Pan HQ, Burgaud G, Liang SK, Guo JJ, Luo T, Li ZX, Zhang SM, Cai L*. 2018. Highlighting patterns of fungal diversity and composition shaped by ocean currents using the East China sea as a model. Molecular Ecology, 27: 564–576. https://doi.org/10.1111/mec.14440
2. Zhang ZF, Zhao P, Cai L*. 2018. Origin of cave fungi. Frontiers in Microbiology, 9, 1407. https://doi.org/10.3389/fmicb.2018.01407
3. Wang M, Tan XM, Liu F, Cai L*. 2018. Eight new Arthrinium species from China. MycoKeys, 34: 1–24. https://doi.org/10.3897/mycokeys.34.24221
4. Thines M*, Crous PW, Aime MC, Aoki T, Cai L, Hyde KD, Miller AN, Zhang N, Stadler M. 2018. Ten reasons why a sequence-based nomenclature is not useful for fungi anytime soon. IMA Fungus, 9: 177–183. https://doi.org/10.5598/imafungus.2018.09.01.11
[2017]
1. Chen Q, Hou LW, Duan WJ, Crous PW*, Cai L*. 2017. Didymellaceae revisited. Studies in Mycology, 87: 105–159. https://doi.org/10.1016/j.simyco.2017.06.002
2. Zhang ZF, Liu F, Zhou X, Liu XZ, Liu SJ, Cai L*. 2017. Culturable mycobiota from Karst caves in China, with descriptions of 20 novel species. Persoonia, 39: 1–31. https://doi.org/10.3767/persoonia.2017.39.01
3. Wang M#, Liu F#, Crous PW, Cai L*. 2017. Phylogenetic reassessment of Nigrospora: Ubiquitous endophytes, plant and human pathogens. Persoonia, 39: 118–142. https://doi.org/10.3767/persoonia.2017.39.06
4. Gao YH, Liu F, Duan WJ, Crous PW, Cai L*. 2017. Diaporthe is paraphyletic. IMA Fungus, 8: 153–187. https://doi.org/10.5598/imafungus.2017.08.01.11
5. Wang MM, Shenoy BD, Li W*, Cai L*. 2017. Molecular phylogeny of Neodevriesia, with two new species and several new combinations. Mycologia, 109: 965–974. https://doi.org/10.1080/00275514.2017.1415075
6. Zhao P, Wang Q, Kakishima M, Cai L* 2017. Resolving the Melampsora epitea complex. Mycologia, 109: 391–407. https://doi.org/10.1080/00275514.2017.1326791
7. Li YM, Shivas RG, McTaggart AR, Zhao P, Cai L* 2017. Ten new species of Macalpinomyces on Eriachne in northern Australia. Mycologia, 109: 408–421. https://doi.org/10.1080/00275514.2017.1330026
8. Zhang Y, Wu W, Cai L* 2017. Polyphasic characterisation of Chaetomium species from soil and compost revealed high number of undescribed species. Fungal Biology, 121: 21–43. https://doi.org/10.1016/j.funbio.2016.08.012
专利及软件著作权
1. 蔡磊，刘芳，赵鹏，段维军，刺盘孢属特异性引物筛查检疫鉴定方法，2019-4-9，中国，CN201910279814.6.
2. 蔡磊，赵鹏，刘芳，柱锈菌科多基因谱系筛查方法，2022-5-10，中国，专利号ZL202010273214.1
3. 蔡磊，赵鹏，刘芳，段维军，菜豆炭疽病菌多基因谱系筛查方法，2020-4-9，中国，申请号：202010273212.2
4. 蔡磊，赵鹏，刘芳，段维军，轮枝菌属多基因谱系筛查方法，2020-4-9，中国，申请号：202010273074.8
5. 段维军，蔡磊，郭立新，段丽君，陈先锋，向日葵黑茎病菌的检测试剂盒，2014-12-3，中国，申请号：201410715199.6
6. 王金婷，周欣，蔡磊，一种雅致放射毛霉GD48及其发酵产物、菌剂与应用， 2020-4-15，申请号：CN202010295813.3
7. 陶刚，蔡磊，一种咖啡浆果炭疽病菌快速分子检测试剂盒及其应用， 2012-2-24，授权日期20130911，申请号：CN202010295813.3， 公开号：CN103290099B
8. 软件著作权： 蔡磊，赵鹏，刘芳，段维军，基于BLAST的菌株DNA条形码（柱锈菌科）鉴定系V2.0.0，2019SR1314189，原始取得，全部权利，2019-06-01.
9. 软件著作权：蔡磊，赵鹏，刘芳，段维军，基于BLAST的菌株DNA条形码（轮枝菌属）鉴定系统V2.0.0，2019SR1390408，原始取得，全部权利，2019-06-01.
10. 软件著作权：蔡磊，刘芳，赵鹏，段维军，基于BLAST的菌株DNA条形码（刺盘孢属）鉴定系统V2.0.0，2019SR1330111，原始取得，全部权利，2019-06-01.
11. 蔡磊，赵鹏，刘芳，检疫性有害生物检测质量控制信息资源库系统V1.0，2024SR2244691，原始取得，全部权利，2024-12-31.
1. GB/T46472-2021柱锈菌科实时荧光PCR检疫鉴定方法, 完成人：段维军, 蔡磊, 赵鹏, 郭立新, 刘芳, 李雪莲, 张永江, 张慧丽, 张祥林, 陈先锋
2. GB/T40192-2021刺盘孢属实时荧光PCR检疫鉴定方法, 完成人：段维军, 蔡磊, 刘芳, 李雪莲, 赵鹏, 郭立新, 张永江, 张慧丽, 陈先锋, 张祥林
3. GB/T40254-2021轮枝菌属特异性引物筛查检疫鉴定方法, 完成人：段维军, 蔡磊, 张慧丽, 赵鹏, 郭立新, 刘芳, 李雪莲, 张永江, 张祥林, 陈先锋
4. GB/T40457-2021 咖啡浆果炭疽病菌检疫鉴定方法，完成人：段维军, 蔡磊, 刘芳, 李雪莲, 张慧丽, 赵鹏, 廖芳, 陈先锋
5. GB/T 45590-2025 向日葵黑茎病菌检疫鉴定方法， 段维军 、蔡磊 、郭立新 、李雪莲 、张慧丽 、雷荣 、徐晗 、廖芳 、陈先锋
6. GB/T 45586-2025 葡萄苦腐病菌检疫鉴定方法， 主要起草人 段维军 、张慧丽 、吴品珊 、蔡磊 、李雪莲 、雷荣 、赵鹏 、高利 、陈先锋
行业标准：5项（已颁布）, 4项已立项
1. SNT 4877.4-2017 基因条形码筛查方法 第四部分：检疫性茎点霉，完成人：段维军,蔡磊, 陈倩，廖芳，郭立新，张慧丽, 陈先锋, 朱水芳 （颁布）
2. SNT 4877.15-2019 基因条形码筛查方法 第四部分：检疫性叶点霉，完成人：段维军,蔡磊, 郭立新，陈倩，段丽君，李雪莲，刘芳，赵文军，陈先锋 （颁布）
3. SNT 4877.15-2019 棉花黄萎病检疫鉴定方法, 完成人：段维军, 郭立新，廖芳，蔡磊, 李雪莲，张祥林，王英超，张慧丽，陈先锋 （颁布）
4. SN/T 5389-2021香蕉黄条叶斑病菌检疫鉴定方法, 完成人：张祥林, 蔡磊, 王翀, 赵鹏, 刘芳, 刁永朝, 李典鹏（颁布）
5. SNT5391-2021苹果溃疡病菌检疫鉴定方法, 完成人： 段维军, 王英超, 郭立新, 蔡磊, 刘芳, 赵鹏, 张慧丽, 李雪莲, 陈先锋, 张永江 （颁布）
6. 2021B114 美洲苹果锈病菌检疫鉴定方法（已立项）
7. 2021B115 北美松疱锈病菌检疫鉴定方法（已立项）
8. 2022B082 云杉帚锈病菌检疫鉴定方法（已立项）
9. 2022B081 白蜡鞘孢菌检疫鉴定方法（已立项）
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