中文 / IMCAS
IMCAS
Home > Lei Cai > Publications

Publications

Updatetime：2017-06-21Source：Author：

 

  • [2023]
  • 1. Liang JM. Li YJ, Dodds PN, Figueroa M, Sperschneider J, Han SL, Tsui CKM, Zhang KY, Li LF, Ma ZH, Cai L*. 2023. Haplotype-phased and chromosome-level assembly of Puccinia polysora, a giga-scale fungal pathogen causing southern corn rust. Molecular Ecology Resources. 23:601-620.
  • 2. Zhao P, Li Y, Li YJ, Liu F, Liang JM, Zhou X, Cai L*. 2023. Applying early divergent characters in higher rank taxonomy of Melampsorineae (Basidiomycota, Pucciniales). Mycology, https://doi.org/10.1080/21501203.2022.2089262
  • 3. Wang F, Wang K, Cai L, Zhao MJ, Kirk PM, Fan GM, Sun QL, Li B, Wang S, Yu ZF, Han D, Ma JC, Wu LH*, Yao YJ*. 2023. Fungal names: a comprehensive nomenclatural repository and knowledge base for fungal taxonomy. Nucleic Acids Research, 51(D1):D708–D716.
  •  
  •  
  • [2022]
  •  
  • 1. Zhou X, Wang J, Liu F, Liang JM, Zhao P, Clement KM Tsui, Cai L*. 2022. Cross-kingdom synthetic microbiota supports tomato suppression of Fusarium wilt disease. Nature Communications, 13, 7890.
  • 2. Liu F#, Ma ZY#, Hou LW, Diao YZ, Wu WP, Damm U, Song S, Cai L*. 2022. Updating species diveristy of Colletotrichum, with a phylogenomic overview. Studies in Mycology 101: 1–156.
  • 3. Chen Q, Bakhshi M, Balci Y, Broders KD, ... Cai L*, Crous PW* 2022. Genera of phytopathogenic fungi: GOPHY 4. Studies in Mycology 101:417–564.
  • 4. Zhou X, Zhang HL, Lu XW, Zhao P, Liu F, Qi ZH, Tang F, Duan WJ*, Cai L*. 2022. Applying meta-data of soybean grain in origin trace and quarantine inspection. Food Research International, 162: 111998.
  • 5. Lu JJ, Zhang XD, Zhang X., Wang LQ, Zhao RL, Liu XY, Liu XZ, Zhuang WY, Chen L*, Cai L*, Wang J*. 2022. Nanopora sequencing of full rRNA operon improves resolution in mycobiome analysis and reveals high diversity in both human gut and environments. Molecular Ecology, doi: 10.1111/mec.16534.
  • 6. Wang MM, Crous PW, Sandoval-Denis M, Han SL, Liu F, Liang JM, Duan WJ, Cai L*. Fusarium and allied genera from China: species diversity and distribution. Persoonia, 2022, 48:1–53.
  • 7. Zhao P, Liu F, Huang JE, Zhou X, Qi XH, Duan WJ, Cai L*. 2022. Cronartium rust (Pucciniales, Cronartiaceae): species delineation, diversity and host alternation. Mycosphere 13(1): 672–723.
  • 8. Qi ZH, Zhou X, Tian L, Zhang HY, Cai L*, Tang F*. 2022. Temporal and spatial variation of microbial communities in stored rice grains from two major depots in China, Food Research International 152: 110876.
  • 9. Qi ZH, Zhou X, Tian L, Zhang HY, Cai L*. Tang F*. 2022. Distribution of mycotoxin-producing fungi across major rice production areas of China. Food Control 134: 108572.
  •  
  •  
  • [2021]
  • 1. Gao M, Xiong C, Gao C, Clement K. M. Tsui, Wang MM, Zhou X, Zhang AM, Cai L*. 2021. Disease-induced changes in plant microbiome assembly and functional adaptation. Microbiome, 9, 187
  • 2. Zhao P, Zhang ZF, Hu DM. Tsui KMC, Qi XH, Phurbu D, Gafforov Y, Cai L*. 2021. Contribution to rust flora in China I, tremendous diversity from natural reserves and parks. Fungal Diversity, 110: 1–58.
  • 3. Zhao P, Crous PW, Hou LW, Cai L, Liu F*. 2021. Fungi of quarantine concern for China I: Dothideomycetes. Persoonia, 47:45–105.
  • 4. Liang JM, Li GS, Hou LW, Zhao MQ, Cai L*. 2021. Leptosphaerulina species isolated from golf turfgrass in China, with description of L. macrospora, sp. nov. Mycologia, 113: 956-967. 
  • 5. Liang M, Li W, Qi Landa, Chen GC, Cai L, Yin WB*. 2021. Establishment of a genetic Transformation system in Guanophilic Fungus Amphichorda guana. Journal of Fungi, 7: 138.
  • 6. Zhou X, Wang JT, Wang WH, Tsui CKM, Cai L*. 2021. Changes in Bacterial and Fungal Microbiomes Associated with Tomatoes of Healthy and Infected by Fusarium oxysporum f. sp. lycopersici. Microbial Ecology, 81:1004–1017.
  •  
  • [2020]
  • 1. Hou LW, Groenewald JZ, Pfenning LH, Yarden O, Crous PW*, and Cai L*. 2020. The phoma-like dilemma. Studies in Mycology. 96: 309–396.
  • 2. Zhang ZF, Zhou SY, Eruwilaichitr L, Lngsriswang S, Raza M, Chen Q, Zhao P, Liu F, Cai L*. 2020. Culturable mycobiota from Karst caves in China II, with descriptions of 33 new species. Fungal Diversity. 106, 29–136.
  • 3. Zhao P, Qi XH, Crous PW, Duan WJ, Cai L*. 2020. Gymnosporangium species on Malus: species delineation, diversity and host alternation. Persoonia 45: 68-100.
  • 4. Hou LW, Hernández-Restrepo M, Groenewald JZ, Cai L*, Crous PW*. 2020. Citizen science project reveals high diversity in Didymellaceae. MycoKeys 65: 49–99.
  • 5. Zhou X, Wang JT, Zhang ZF, Li W, Chen W*, Cai L*. 2020. Microbiota in the rhizosphere and seed of rice from China, with reference to their transmission and biogeography.  Frontiers in Microbiology. 11:995.
  • 6. Wang MM, Ma YY, Feng CH, Cai L, Li W*. 2020. Diversity of pelagic and benthic bacterial assemblages in the western pacific ocean. Frontiers in Microbiology 11: 1730.
  • 7. Le EW, Ren JW, Chen Q, Zhang HX, Lin B, Zhang H, Zhang SM, Zhang XL, Cai L*, Liu XZ*. 2020. Uncovering the mysterious identity of Taisui—an old Chinese folk legend. Science China Life Sciences 63: 1942–1945.
  •  
  • [2019]
  • 1. Liu F, Bonthond G, Groenewald E, Cai L*, Crous PW*. 2019. Sporocadaceae, a family of coelomycetous fungi with appendage-bearing conidia. Studies in Mycology 92: 287–415.
  • 2. Raza M, Zhang ZF, Hyde KD, Diao YZ, Cai L*. 2019. Culturable Plant pathogenic fungi associated with sugarcane in southern China. Fungal Diversity 99: 1–104.
  • 3. Wang, MM, Chen Q, Diao YZ, Duan WJ, Cai L*. 2019. Fusarium incarnatum-equiseti complex from China. Persoonia, 43: 70–89. 
  • 4. Li W, Wang MM, Burgaud G, Yu HM, Cai L*. 2019. Fungal community composition and potential depth-related driving factors impacting distribution pattern and trophic modes from epi- to abyssopelagic zones of the Western Pacific Ocean. Microbial Ecology, 78: 820–831.
  • 5. Liu F, Wang J, Li H, Wang W, Cai L*. 2019. Setophoma spp. on Camellia sinensis. Fungal Systematics and Evolution 4: 43–57.
  • 6. Liang JM, Li GS, Zhao MQ, Cai L*. 2019. A new leaf blight disease of turfgrasses caused by Microdochium poae sp. nov. Mycologia, 111: 265–273.
  • 7. Zhang ZF, Cai L*. 2019. Substrate and spatial variables are major determinants of fungal community in karst caves in southwest China. Journal of Biogeography, 46: 1504–1518.
  • 8. Liang JM, Li GS, Zhou SY, Zhao MQ, Cai L*. 2019. Myrothecium-like new species from trufgrasses and associated rhizosphere. MycoKeys 51: 29–53.
  • 9. Diao YZ, Chen Q, Jiang XZ*, Houbraken Jos, Cai L, Wu WP. 2019. Penicillium section Lanata-divaricata from acidic soil. Cladistics 35: 514–549.
  • 10. Qi XH, Cai L, Zhao P*. 2019. Quasipucciniastrum agrimoniae, gen. et sp. nov. on Agrimonia (Rosaceae) from China. Mycology 10: 1–10.
  •  
  •  
  • [2018]
  • 1. Li W*, Wang MM, Pan HQ, Burgaud G, Liang SK, Guo JJ, Luo T, Li ZX, Zhang SM, Cai L*. 2018. Highlighting patterns of fungal diversity and composition shaped by ocean currents using the East China sea as a model. Molecular Ecology, 27: 564–576.
  • 2. Zhang ZF, Zhao P, Cai L*. 2018. Origin of cave fungi. Frontiers in Microbiology, 9, 1407.
  • 3. Wang M, Tan XM, Liu F, Cai L*. 2018. Eight new Arthrinium species from China. MycoKeys, 34: 1–24.
  • 4. Thines M*, Crous PW, Aime MC, Aoki T, Cai L, Hyde KD, Miller AN, Zhang N, Stadler M. 2018. Ten reasons why a sequence-based nomenclature is not useful for fungi anytime soon. IMA Fungus, 9: 177–183.
  • 5. Zhao YZ, Zhang ZF, Cai L, Pen WJ, Liu F*. 2018. Four new filamentous fungal species from newly-collected and hive-stored bee pollen. Mycosphere 9: 1089–1116.
  •  
  •  
  • [2017]
  • 1. Chen Q, Hou LW, Duan WJ, Crous PW*, Cai L*. 2017. Didymellaceae revisited. Studies in Mycology, 87: 105–159. 
  • 2. Zhang ZF, Liu F, Zhou X, Liu XZ, Liu SJ, Cai L*. 2017. Culturable mycobiota from Karst caves in China, with descriptions of 20 novel species. Persoonia, 39: 1–31.
  • 3. Wang M, Liu F, Crous PW, Cai L*. 2017. Phylogenetic reassessment of Nigrospora: Ubiquitous endophytes, plant and human pathogens. Persoonia, 39: 118–142.
  • 4. Gao YH, Liu F, Duan WJ, Crous PW, Cai L*. 2017. Diaporthe is paraphyletic. IMA Fungus, 8: 153–187.
  • 5. Wang MM, Shenoy BD, Li W*, Cai L*. 2017. Molecular phylogeny of Neodevriesia, with two new species and several new combinations. Mycologia, 109: 965–974.
  • 6. Ma R, Chen Q, Fan YL, Wang Q, Chen SF, Liu XZ, Cai L*, Yao B*. 2017. Six new soil-inhabiting Cladosporium species from plateaus in China. Mycologia, 109: 244–260.
  • 7. Zhao P, Wang Q, Kakishima M, Cai L*. 2017. Resolving the Melampsora epitea complex. Mycologia, 109: 391–407.
  • 8. Li YM, Shivas RG, McTaggart AR, Zhao P, Cai L*. 2017. Ten new species of Macalpinomyces on Eriachne in northern Australia. Mycologia, 109: 408-421.
  • 9. Li YM, Shivas RG, Cai L*. 2017. Cryptic diversity in Tranzscheliella spp. (Ustilaginales) is driven by host switchs. Scientific Reports, 7: 43549.
  • 10. Zhang Y, Wu W, Cai L*. 2017. Polyphasic characterisation of Chaetomium species from soil and compost revealed high number of undescribed species. Fungal Biology, 121: 21–43.
  • 11. Hu DM, Wang M, Cai L*. 2017. Phylogenetic assessment and taxonomic revision of Mariannaea. Mycological Progress, 16: 271–283.
  • 12. Jiang JR, Chen Q, Cai L*. 2017. Polyphasic characterisation of three novel species of Paraboeremia. Mycological Progress, 16: 285–295.
  •  
  • [2016]
  • 1. Liu F, Wang M, Damm U, Crous PW, Cai L*. 2016. Species boundaries in plant pathogenic fungi: a Colletotrichum case study. BMC Evolutionary Biology, 16: 81.
  • 2. Hou LW, Liu F, Duan WJ, Cai L*. 2016. Colletotrichum aracearum and C. camelliae-japonicae, two holomorphic new species from China and Japan. Mycosphere, 7: 1111–1123.
  • 3. Li W*, Mang M, Bian X, Guo J, Cai L*. 2016. A high-level fungal diversity in the intertidal sediment of Chinese seas presents the spatial variation of community composition. Frontiers in Microbiology, 7: 2098.
  • 4. Gao YH, Liu F, Cai L*. 2016. Unravelling Diaporthe species associated with Camellia. Systematics and Biodiversity, 14: 102–117.
  • 5. Zhou N, Zhang Y, Liu F, Cai L* 2016. Halophilic and thermotolerant Gymnoascus species from several special environments, China. Mycologia, 108: 179–191. 
  • 6. Zhao P, Liu F, Li YM, Cai L*. 2016. Inferring phylogeny and speciation of Gymnosporangium species, and their coevolution with host plants. Scientific Reports, 6: 29339.
  •  

 

Contact Us
Copyright The State Key Laboratory of Mycology (SKLM), Institute of Microbiology, Chinese Academy of Sciences
WeChat Official Account