Publications

Publication

Daranagam, D.A., Hyde K.D.*, Sir E.B., Thambugala K.M., Tian Q., Samarakoon M.C., McKenzie E.H.C., Jayasiri S.C., Tibpromma S., Bhat J.D., Liu X.Z.* & Stadler M. 2018. Towards a natural classification and backbone tree for Graphostromataceae, Hypoxylaceae, Lopadostomataceae and Xylariaceae. Fungal Diversity 88:1–165

Zhang W.W., Zhang X.L., Li K., Wang C.S., Cai L., Zhuang W.Y., Xiang M.C. & Liu X.Z.*2018. Introgression and gene family contraction drive the evolution of lifestyle and host shifts of hypocrealean fungi. Mycology 9: 176–188

Mwaheb M.A.M.A., Hussain M., Tian J.Q., Zhang X.L., Hamid M.I., El-Kassim N.A., Hassan G.M., Xiang M.C.* & Liu X.Z.* 2017. Synergetic suppression of soybean cyst nematodes by chitosan and Hirsutella minnesotensis via the assembly of the soybean rhizosphere microbial communities. Biological Control 115:85-94

Sun J.Z., Liu X.Z.*, Hyde K.D.*, Zhao Q., Maharachchikumbura S.S.N., Camporesi E., Bhat J., Nilthong S., Lum S. Calcarisporium xylariicola sp. nov. and introduction of Calcarisporiaceae fam. nov. in Hypocreales. Mycol Progress 16: 433–445. https://doi.org/10.1007/s11557-017-1290-4 

Hamid MI, Hussain M, Wu Y, Zhang X, Xiang M*, Liu X*. (2017). Successive soybean-monoculture cropping assembles rhizosphere microbial communities for the soil suppression of soybean cyst nematode. FEMS Microbiology Ecology 93, fiw222

Tian J#, Wu B#, Chen H, Jiang N, Kang X, Liu X*. (2017). Patterns and drivers of fungal diversity along an altitudinal gradient on mount gongga, China. Journal of Soils & Sediments, 17: 2856–2865 

Wang M, Tian J, Xiang M, Liu X*. (2017). Living strategy of cold-adapted fungi with the reference to several representative species. Mycology, 8:178-188, DOI: 10.1080/21501203.2017.1370429. 

Lin B, Zhao X, Zheng Y, Qi S*, Liu X* (2017) Effect of grazing intensity on protozoan community, microbial biomass, and enzyme activity in an alpine meadow on the Tibetan Plateau. Journal of Soils & Sediments: 17: 2752–2762

Sun JZ, Liu JK, McKenzie EHC, Liu XZ*, Hyde KD. (2017) Ramularia coleosporii (Mycosphaerella) on Plumeria rust in Thailand. Studies in Fungi 2 (1): 38–46

Wang X.W., Liu X.Z.*, and Groenewald J.Z. (2017) Phylogeny of anaerobic fungi (phylum Neocallimastigomycota), with contributions from yak in China, Antonie Van Leeuwenhoek. 110: 87-103. doi:10.1007/s10482-016-0779-1

杨顺，杨婷，林斌，刘杏忠*，向梅春*. 两株溶磷真菌的筛选、鉴定及溶磷效果的评价. 微生物学报2017. 网络出版时间：2017-05-25.

Su Y., Jiang X.Z., Wu W.P., Wang M.M., Hamid M.I., Xiang M.C., Liu X.Z.*, Genomic, transcriptomic, and proteomic analysis provide insights into the cold adaptation mechanism of the obligate psychrophilic fungus Mrakia psychrophila, G3: Genes Genomes Genet, 6(11)(2016), 3603-3613

Hussain M., Hamid M.I., Wang N.N, Lin B., Xiang M.C.*, Liu X.Z.*, The transcription factor SKN7 regulates conidiation, thermotolerance, apoptotic-like cell death and parasitism in the nematode endoparasitic fungus Hirsutella minnesotensis, Scientific Reports, 6(2016), 30047

Sun J.Z., Pei Y.F., Li E.W., Li W., Hyde K.D., Yin W.B.*, Liu X.Z.*, A new species of Trichoderma hypoxylon harbours abundant secondary metabolites, Scientific Reports, 6(2016), 37369

Zhang Y.J.*, Hou J.X., Zhang S., Hausner G., Liu X.Z.*, Li W.J., The intronic minisatellite OsMin1 within a serine protease gene in the Chinese caterpillar fungus Ophiocordyceps sinensis, Appl Microbiol Biotechnol, 100(8)(2016), 3599-3610

Wang N.N., Zhang Y.J., Hussain M. Li, K., Xiang M.C., Liu X.Z.*, The mitochondrial genome of the nematode endoparasitic fungus Hirsutella rhossiliensis, Mitochondrial DNA Part B: Resources, 1(1)(2016), 114-115

Wang X.W., Lombard L., Groenewald J.Z., Li J., Videira S.I.R., Samson R.A., Liu X.Z.*, Crous P.W.*, Phylogenetic reassessment of the Chaetomium globosum species complex, Persoonia 36(2016), 83-133

Daranagama D.A., Camporesi E., Liu X.Z.*, Bhat D.J., Chamyuang S., Bahkali A.H., Stadler M., Hyde K.D., Tristratiperidium microsporum gen. et sp. nov. (Xylariales) on dead leaves of Arundo plinii, Mycological Progress, 15(1)(2016), 8

Daranagama D.A., Liu X.Z.*, Chamyuang S., Stadler M., Bahkali A.H., Hyde K.D., Towards a natural classification of Sordariomycetes: The genera Frondisphaeria, Immersisphaeria, Lasiobertia, Pulmosphaeria and Yuea (Sordariomycetes incertae sedis), Phytotaxa, 258(2)(2016), 153-163

Hamid M.I., Hussain M., Wu Y.P., Zhang X.L., Xiang M.C.*, Liu X.Z.*, Successive soybean-monoculture cropping assembles rhizosphere microbial communities for the soil suppression of soybean cyst nematode, FEMS Microbiology Ecology, 93(1)(2016), fiw222

董彩虹, 李文佳, 李增智, 刘杏忠*等, 我国虫草产业发展现状、问题及展望—虫草产业发展金湖宣言, 菌物学报, 35(1)(2016), 1-15

Daranagama, D.A., Liu, X.Z.*, Chamyuang, S., Stadler, M., Bahkali, A.H. & Hyde, K.D. 2015. Rhopalostroma brevistipitatum sp. nov. from Thailand with an extended generic description for Rhopalostroma. Phytotaxa 227(3): 229–242

Daranagama, D.A., Camporesi, E., Tian, Q., Liu, X.Z.*, Chamyuang, S., Stadler, M. & Hyde, K.D. 2015. Anthostomella is polyphyletic comprising several genera in Xylariaceae. Fungal Diversity 73: 203–238

Yue, Q., Chen, L., Li, Y., Bills, G.F., Zhang, X.Y., Xiang, M.C., Li, S.J., Che, Y.S., Wang, C.S., Niu, X.M., An, Z.Q.* & Liu, X.Z.* 2015. Functional operons in secondary metabolic gene clusters in Glarea lozoyensis (Fungi, Ascomycota, Leotiomycetes). mBio 6(3): e00703-15. 

Shu, C., Lai, Y.L., Yang, E.C., Chen, S.Y., Xiang, M.C.* & Liu, X.Z.* 2015. Functional response of the fungus Hirsutella rhossiliensis to the nematode, Heterodera glycines. Science China Life Sciences 58: 704–712

Shu, C., Jiang, X.Z., Cheng, X.L., Wang, N.N., Chen, S.Y., Xiang, M.C.* & Liu, X.Z.*2015. Genetic structure and parasitization-related ability divergence of a nematode fungal pathogen Hirsutella minnesotensis following founder effect in China. Fungal Genetics and Biology 81: 212–220

Su, L., Guo, L.Y.*, Hao, Y., Xiang, M.C., Cai, L., Liu, X.Z.* 2015. Rupestriomyces and Spissiomyces, two new genera of rock-inhabiting fungi from China. Mycologia 107: 831–844. 

Wang, X.N., Zhang, X.L., Liu, L., Yu, Y.F., Xiang, M.C., Wang, W.Z., Sun, X., Che, Y.S., Guo, L.D., Liu, G., Guo, L.Y., Wang, C.S., Yin, W.B., Stadler, M., Zhang, X.Y.* & Liu, X.Z.* 2015. Genomic and transcriptomic analysis of the endophytic fungus Pestalotiopsis fici reveals its lifestyle and high potential for synthesis of natural products. BMC Genomics 16: 28

Chen, L., Yue, Q., Li, Y., Niu, X.M., Xiang, M.C., Wang, W.Z., Bills, G.F., Liu, X.Z.*& An, Z.Q.* 2015. Engineering of Glarea lozoyensis for the exclusive production of the pneumocandin B0 precursor of the antifungal drug caspofungin acetate. Applied and Environmental Microbiology 81: 1550–1558 

Wang, L., Feng, Y., Tian, J.Q., Xiang, M.C., Sun, J.Z., Ding, J.Q., Yin, W.B., Stadler, M., Che, Y.S.* & Liu, X.Z.* 2015. Farming of a defensive fungal mutualist by an attelabid weevil. The ISME Journal 9: 1793–1801

Wang, M.M., Jiang, X.Z., Wu, W.P., Hao, Y., Su, L., Cai, L., Xiang, M.C. & Liu, X.Z.*2015. Psychrophilic fungi from the world’s roof. Persoonia 34: 100–112

Sun, J.Z., Park, S.Y, Kang, S.C., Liu, X.Z., Qiu, J.Z. & Xiang, M.C.* 2015. Development of a transformation system for Hirsutella spp. and visualization of the mode of nematode infection by GFP-labeled H. minnesotensis. Scientific Reports 5: 10477 

Tian, J.Q.*, Shu, C., Chen, H., Qiao, Y.C., Yang, Gang, Xiong, W., Wang, L., Sun, J.Z. & Liu, X.Z. 2015. Response of archaeal communities to water regimes under simulated warming and drought conditions in Tibetan Plateau wetlands. J Soils Sediments 15: 179–188

Daranagama, D. A., Liu, X.Z.*, Chamyuang, S., Stadler, M. & Hyde, K.D. 2014. A multiple gene genealogy reveals phylogenetic placement of Rhopalostroma lekae. Phytotaxa 186(4): 177–187

Lai, Y.L., Liu, K.K., Zhang, X.Y., Zhang, X.L., Li, K., Wang, N.N., Shu, C., Wu, Y.P., Wang, C.S., Bushley, K.E., Xiang, M.C.* & Liu, X.Z.* 2014. Comparative genomics and transcriptomics analyses reveal divergent lifestyle features of nematode-endoparasitic fungus Hirsutella minnesotensis. Genome Biology & Evolution 6(11): 3077–3093

Zhang, Y.J., Zhang, S., Li, Y.L., Ma, S.L., Wang, C.S., Xiang, M.C., Liu, X., An, Z.Q., Xu, J.P.* & Liu, X.Z.* 2014. Phylogeography and evolution of a fungal-insect association on the Tibetan Plateau. Molecular Ecology 23: 5337–5355 

Lai, Y.L., Xiang, M.C.*, Liu, S.C., Li, E.W., Che, Y.S. & Liu, X.Z.* 2014. A novel high-throughput nematicidal assay using embryo cells and larvae of Caenorhabditis elegans. Experimental Parasitology 139: 33–41

Liu, K.K., Zhang, W.W., Lai, Y.L., Xiang, M.C., Wang, X.N., Zhang, X.Y. & Liu, X.Z.* 2014 Drechslerella stenobrocha genome illustrates the mechanism of constricting rings and the origin of nematode predation in fungi. BMC Genomics 15: 114

Liu, J.B., Sun, J.Z., Qiu, J.Y., Liu, X.Z. & Xiang, M.C.* 2014. Integrated management of root-knot nematodes on tomato in glasshouse production using nematicides and a biocontrol agent, and their effect on soil microbial communities. Nematology 16: 46–473

He, F.#, Lin, B.#, Sun, J.Z. & Liu, X.Z.* 2013. Knufia aspidiotus sp. nov., a new black yeast from scale insects. Phytotaxa 153(1): 39–50
Tian, J.Q., Zhu, Z.X., Wu, B., Wang, L. & Liu, X.Z.* 2013. Bacterial and fungal communities in Pu’er tea samples of different ages. Journal of Food Science 78: 1249–1256

Zhu Y.B., Tian J.Q., Shi F.Y., Su L., Liu K.K., Xiang M.C.* & Liu, X.Z.* 2013. Rhizosphere bacterial communities associated with healthy and Heterodera glycines-infected soybean roots. European Journal of Soil Biology 58: 32–37

Li G.J., Zhao Q., Zhao D., Li S.F., Yue S.F., Wen H.A.* & Liu, X.Z.* 2013. Russula atroaeruginea and R. sichuanensis spp. nov. from southwest China. Mycotaxon 124: 173–188

Li G.J., Zhao D., Li S.F., Yang H.J., Wen H.A.* & Liu, X.Z*. 2013. Russula changbaiensis sp. nov. from northeast China. Mycotaxon 124: 269–278

Zhu Y.B., Shi F.Y., Tian J.Q., Liu J.B., Chen S.Y., Xiang M.C*. & Liu, X.Z.* 2013. Effect of soybean monoculture on the bacterial communities associated with cycsts of Heterodera glycines. Journal of Nematology 45(3): 228–235

Dhanushka U., Dimuthu S.M., Liu, X.Z.*, Ekachai C. & Kevin D.H. 2013. What are the common anthracnose pathogens of tropical fruits? Fungal Diversity 61(1):165–179

Chen L., Yue Q., Zhang X.Y., Xiang M.C., Wang C.S., Li S.J., Che Y.S., Francisco J.O., Gerald F.B., Liu, X.Z.* & An Z.Q.* 2013. Genomics-driven discovery of the pneumocandin biosynthetic gene cluster in the fungus Glarea lozoyensis. BMC Genomics 14: 339

Wu B., Tian J.Q., Bai C.M., Xiang M.C., Sun J.Z., Liu, X.Z.* 2013. The biogeography of fungal communities in wetland sediments along the Changjiang River and other sites in China. The ISME Journal 7: 1299–1039

Zhang, S., Zhang, Y.J., Liu, X.Z.*, Zhang, H. & Liu, D.S. 2013. On the reliability of DNA sequences of Ophiocordyceps sinensis in public databases. Journal of Industrial Microbiology & Biotechnology 40:365–378

Aminuzzaman, F.M., Xie, H.Y., Duan, W.J., Sun, B.D. & Liu, X.Z*. 2013. Isolation of nematophagous fungi from eggs and females of Meloidogyne spp. and evaluation of their biological control potential. Biocontrol Science and Technology 23: 170–182

Sun, J.Z., Xie, H.Y., Qiu, J.Z., Liu, X.Z. & Xiang, M.C.* 2013. Parasitism of secondary-stage juvenile of Heterodera glycines and four larva stages of Caenorhabditis elegans by Hirsutella spp. Experimental Parasitology 135: 96–101 

Udayanga, D.*, Liu, X.Z.*, Crous, P.W., McKenzie, E.H.C., Chukeatirote, E. & Hyde, K.D. 2012. A multi-locus phylogenetic evaluation of Diaporthe (Phomopsis). Fungal Diversity 56:157–171

Udayanga, D.*, Liu, X.Z.*, Crous, P.W., McKenzie, E.H.C., Chukeatirote, E. & Hyde, K.D. 2012. Multilocus phylogeny reveals three new cryptic species from Thailand. Cryptogamie Mycologie 33: 295–309

Yang, E.C.？, Xu, L.L.？, Yang, Y., Zhang, X.Y., Xiang, M.C., Wang, C.S. An, Z.Q.* &Liu, X.Z.* 2012. Origin and Evolution of Carnivorism in the Ascomycota (Fungi). PNAS 109(27): 10960–10965

Feng, Y.#, Wang L.#, Niu, S.B., Li, L., Si, Y.K., Liu, X.Z.* & Che Y.S.* Naphthalenones from a Perenniporia sp. inhabiting the larva of a phytophagous weevil, Euops chinesis. Journal of Natural Products 75: 1339？1345 

Liu, R.J., Dai, M., Wu, X., Li, M., & Liu, X.Z.* 2012. Suppression of the root-knot nematode [Meloidogyne incognita (Kofoid & White) Chitwood] on tomato by dual inoculation with arbuscular mycorrhizal fungi and plant growth-promoting rhizobacteria. Mycorrhiza 22: 289–296

Shrestha, B., Zhang, W.M., Zhang, Y.J. & Liu, X.Z.* 2012. The medicinal fungusCordyceps militaris: research and development. Mycological Progress 11(3): 599–614

Yang, J., Kong, L.G., Chen, X.L., Wang, D.W., Qi, L.H., Zhao, W.S., Zhang, Y., Liu, X.Z.* & Peng, Y.L.* 2012. A carnitine–acylcarnitine carrier protein, MoCrc1, is essential 3 for pathogenicity in Magnaporthe oryzae. Current Genetics 58(3): 139–48

Zhang, Y.J., Bai, F.R., Zhang, S. & Liu, X.Z.* 2012. Determining novel molecular markers in the Chinese caterpillar fungus Ophiocordyceps sinensis by screening a shotgun genomic library. Applied Microbiology and Biotechnology 5: 1243–1251

Liu, K.K., Tian, J.Q., Xiang, M.C. & Liu, X.Z.* 2012. How carnivorous fungi trap nematodes with constricting ring, a three cells structure. Protein & Cell 3: 325–328

Zhang, Y.J., Li, E.W., Wang, C.S., Li, Y.L. & Liu, X.Z.* 2012. Ophiocordyceps sinensis, the flagship fungus of China: terminology, life strategy and ecology. Mycology 3(1): 2–10

Li, F., Wen, H.A., Liu, X.Z.*, Zhou, F.Z. & Chen, G.C. 2012. Gene cloning and recombinant expression of a novel fungal immunomodulatory protein fromTrametes versicolor. Protein Expression and Purification 82(2): 339–344

Udayanga D, Liu XZ*, McKenzie EHC, Chukeatirote E, Bahkali AHA and Hyde KD. (2011). The genus Phomopsis: biology, applications, species concepts and names of common phytopathogens. Fungal Diversity, 50:189–225

Zhang YJ, Zhang S, Liu XZ*, Wen HA and Wang M. (2011). Cloning and characterization of mating-type genes from the traditional Chinese medicinal fungusOphiocordyceps sinensis. Fungal Biology, 115:708-714

Hawksworth DL, Crous PW, Bai FY, Cai L, Guo LD, Liu XZ et al. (2011). The Amsterdam declaration on fungal nomenclature. IMA Fungus, 2(1): 105–112

Li F, Wen HA, Zhang YJ, An M and Liu XZ*. (2011). Purification and characterization of a novel immunomodulatory protein (FIP-tvc) from Trametes versicolor. Science in China Series C: Life Science, 54 (4): 379-385

Jiang XZ, Yu HY, Xiang MC, Liu XY and Liu XZ*. (2011). Echinochlamydosporium variabile, a new genus and species of Zygomycota from soil nematode. Fungal Diversity, 46:43–51

Xu LL, Lai YL, Wang L and Liu XZ*. (2011). Effects of abscisic acid and nitric oxide on trap formation and trapping of nematodes by the fungus Drechslerella stenobrocha AS6.1 Fungal Biology, 115: 97-101.

Xiang MC, Xiang PA, Jiang XZ, Duan WJ and Liu XZ*. (2010). Detection and quantification of the nematophagous fungus Hirsutella minnesotensis in soil with real-time PCR.Applied Soil Ecology, 44: 170-175.

Xie HY, Aminuzzaman FM, Xu LL, Lai YL, Li F and Liu XZ*. (2010). Trap induction and trapping in eight nematode-trapping fungi (Orbiliaceae) as affected by juvenile stage of Caenorhabditis elegans. Mycopathologia, 169: 467-473.

Gao L and Liu XZ*. (2010). Effects of carbon concentrations and carbon to nitrogen ratios on sporulation of two biological control fungi as determined by different culture methods.Mycopathologia, 169: 475-481.

Gao L and Liu XZ*. (2010). Nutritional requirements of mycelial growth and sporulation of several biocontrol fungi in submerged and on solid culture. Microbiology-Russia, 79: 612-619.

ZhangYJ, Zhang S, Liu XZ*, Wen HA and Wang M. (2010). A simple method of genomic DNA extraction suitable for analysis of bulk fungal strains. Letters in Applied Microbiology, 54: 114–118.

Zhang YJ, Xu LL, Zhang S, Liu XZ*, An ZQ, Wang M and Guo YL, (2009). Genetic diversity of Ophiocordyceps sinensis, a medicinal fungus endemic to the Tibetan Plateau: Implications for its evolution and conservation. BMC Evolutionary Biology, 9: 290.

Zhang YJ, Zhang S, Wang M, Bai FY and Liu XZ*. (2010). High diversity of  the fungal community structure in naturally - occurring Ophiocordyceps sinensis. PLoS One, 5 (12): e15570.

Gao L, Liu XZ*. (2009). A novel two-stage cultivation method to optimize carbon concentration and carbon-to-nitrogen ratio for sporulation of biocontrol fungi. Folia Microbiology, 54 (2): 142–146.

Xu LL, Li F, Xie HY, Liu XZ*. (2009). A novel method for promoting conidial production by a nematophagous fungus, Pochoniachla mydosporia AS6.8. World Journal of Microbiology and Biotechnology, 25:1989–1994.

Liu XZ, Xiang MC, Che YS. (2009). The living strategy of nematophagous fungi. Mycoscience, 50:20–25.

Sun BD, Liu XZ*. (2008). Occurrence and diversity of insect-associated fungi in natural soils in China. Applied Soil Ecology, 39: 100 –108.

Sun BD, Yu HY, Chen AJ., Liu XZ*. (2008). Insect-associated fungi in soils of field crops and orchards. Crop Protection, 27:1421–1426.

Zhang YJ, Liu XZ*, Wang M. (2008). Cloning, expression, and characterization of two novel cuticle-degrading serine proteases from the entomopathogenic fungusCordyceps sinensis. Research in Microbiology, 159: 462-469.

Zhang LM, Yang EC, Xiang MC, Liu XZ*, Chen SY. (2008). Population dynamics and biocontrol efficacy of the nematophagous fungus Hirsutella rhossiliensis as affected by stage of the soybean cyst nematode. Biological Control, 47: 244–249.

Yang Y, Yang EC, An ZQ, and Liu XZ*. (2007). Evolution of nematode-trapping cells of predatory fungi of the Orbiliaceae based on evidence from rRNA-encoding DNA and multiprotein sequences. Proceeding of National Academy of Science of United states of American, 104(20): 8379-8384.

Wang B, Wu WP and Liu XZ*. (2007). Purification and characterization of a neutral serine protease with nematicidal activity from Hirsutella rhossiliensis. Mycopathologia, 63:169–176.

Xiang MC, Yang XH, Wang ZX, Liu XZ*, Chen SY, Xiao QM. (2007). Variability of morphology, parasitism, and nucleotide sequences among isolates and species of nematophagous Hirsutella. Biological Control, 41: 110–119.

Zhao GZ, Liu XZ*, Wu WP. (2007) Helicosporous hyphomycetes with the special references to China. Fungal Diversity, 26: 313–722; 524 (Monograph).